[3] Knoppová J., Sobotka R., Tichy M, Yu J., Konik P., Halada P., Nixon PJ., Komenda.J.,
Discovery of a Chlorophyll Binding Protein Complex Involved in the Early Steps of Photosystem II Assembly in Synechocystis,
Plant Cell.,
26(3):1200-1212( 2014).
[9] Nagao R., Suzuki T., Okumura A., Niikura A., Iwai M., Naoshi D., Tomo T., Ren Shen J., Ikeuchi M., Enami I.,
Topological Analysis of the Extrinsic PsbO, PsbP and PsbQ Proteins in a Green Algal PSII Complex by Cross-Linking with a Water-Soluble Carbodiimide,
Plant and Cell Physiology,
51(5):718-727(2010).
[24] Emilia L.W.u., Olof E., Sunhwan J.o., Danielle S., Min S.Y., Jeffery B.K., Göran W., Wonpil I.,
Molecular Dynamics and NMR Spectroscopy Studies of E. Coli Lipopolysaccharide Structure and Dynamics,
Biophys. J., 105(6): 1444–1455 (2013).
[31] Brooks B.R., Brooks C.L., Mackerell A.D Jr., Nilsson L., Petrella R J., Roux B., Won Y., Archontis G., Bartels C., Boresch S., Caflisch A., Caves L., Cui Q., Dinner AR., Feig M., Fischer S., Gao J., Hodoscek M., Kuczera K.,
CHARMM: the Biomolecular Simulation Program,
Journal of Computational Chemistry, 30(10):1545–1614 (2009).
[34] Ibeji C.U., Ujam O.T., Chukwuma Chime C., Akpomie K G., Anarado C.J.O., Odewole O.A.,
Dehydroacetic Acid-Phenylhydrazone as a Potential Inhibitor for Wild-Type HIV-1 Protease: Structural, DFT, Molecular Dynamics, 3D QSAR and ADMET Characteristics,
Iran. J. Chem. Chem. Eng. (IJCCE), 40(1): 215-230(2021).
[35] Jumin L.X., Jason M.S., Min S.Y., Peter K.E., Justin A.L., Shuai W., Joshua B., Jong C.J.,
CHARMM-GUI input generator for NAMD, GROMACS, AMBER, OpenMM, and CHARMM/OpenMM Simulations Using the CHARMM36 Additive Force Field,
J. Chem. Theory Comput.,
12(1):405–413 (2016).
[36] Elber
R., Ruymgaart A.P., Hess B.,
SHAKE Parallelization,
Eur. Phys. J. Spec. Top., 200(1):211-223(2011).